Season 3 began airing September 17, 2010.
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Episodes
| # | Image | Episode | Prod. # | Airdate |
| 01 |  |
Clone Cadets | 3.01 | September 17, 2010 |
| 02 |  |
ARC Troopers | 3.02 | September 17, 2010 |
| 03 |  |
Supply Lines | 2.24 | September 24, 2010 |
| 04 |  |
Sphere of Influence | 2.25 | October 1, 2010 |
| 05 |  |
Corruption | 3.04 | October 8, 2010 |
| 06 |  |
The Academy | 2.26 | October 15, 2010 |
| 07 |  |
Assassin | 2.21 | October 22, 2010 |
| 08 |  |
Evil Plans | 3.03 | November 5, 2010 |
| 09 |  |
Hunt for Ziro | 3.05 | November 12, 2010 |
| 10 |  |
Heroes on Both Sides | 3.06 | November 19, 2010 |
| 11 |  |
Pursuit of Peace | 3.07 | December 3, 2010 |
| 12 | No Image Available | Nightsisters | 0.00 | January 7, 2011 |
| 13 | No Image Available | Monster | 0.00 | January 14, 2011 |
| 14 | No Image Available | Witches of the Mist | 0.00 | January 21, 2011 |